An intelligent storage control system is provided in the present invention. The system includes a tower body, a delivery module, a drive module, a clamping module, an operation module, a control module, and a communication unit. When the control module receives a storage command transmitted by the operation module, the main controller is configured to analyze whether there is free storage space. If there is a free storage space, the control module controls the drive module to drive the delivery module to push the bicycle to the storage space of the tower body, and a serial number of the storage space is displaced on a display screen. The present invention can operate conveniently, and can save the footprint area of bicycles.