A fuel cell system includes a fuel cell stack that generates electricity using fuel and oxidant gases, a reformer that produces the fuel gas by reforming a raw material, a raw material feeder that supplies the raw material to the reformer, a combustor that combusts anode off-gas discharged from the anode of the fuel cell stack, and a controller that controls the raw material feeder. The period of a load-following operation in which the power output of the fuel cell stack shifts from a lower level to a higher level, is divided into multiple sub-periods. For each sub-period, a ratio is determined from the increase amounts in the flow rate of the raw material during the sub-period and the length of the sub-period. The controller controls the raw material feeder to make a ratio on the higher output side smaller than another on the lower output side.