The present disclosure provides a high-precision time synchronization method. With the method, a traditional time synchronization protocol of a traditional IEEE 1588 network can be improved by introducing a periodic perturbation time between any two nodes in the time synchronization network, the perturbation time can be caused by changing the lengths of transmission paths or introducing clock phase perturbation due to different clock frequencies in the transistor and the receiver. With the method, the relevance of resulting errors of multiple synchronizations can be eliminated, and the perturbation can be compensated by means of statistical averaging, such that the synchronization error due to the low clock resolution of the synchronization node can be decreased. The method may realize the time synchronization at the precision of nanosecond, having significant advantages over the traditional time synchronization method based on IEEE 1588 protocol.