A fuel cell system includes: a fuel cell that includes an anode and a cathode and generates electricity by reducing a mediator at the cathode; a regenerator that oxidizes the mediator reduced by the cathode; a first path that leads from the cathode to the regenerator and through which the mediator reduced by and discharged from the cathode is guided to the regenerator; a second path that leads from the regenerator to the cathode and through which the mediator oxidized at the regenerator is returned to the cathode; and a first heat exchanger that exchanges heat between a first fluid and a second fluid, the first fluid being a fluid flowing in the first path and containing the mediator reduced by cathode, and the second fluid being a fluid flowing in the second path and containing the mediator oxidized at the regenerator.