A diaphragm pump includes: a housing; a diaphragm; an actuator configured to reciprocate the diaphragm based on a previously selected operation mode out of a plurality of operation modes; a setting device configured to set and send an operation mode and operating conditions; and a control device configured to receive the operation mode and the operating conditions from the setting device, and control the actuator to move the diaphragm forward or backward in accordance with the operation mode and the operating conditions received from the setting device. The plurality of operation modes include a normal operation mode in which the actuator is driven to perform a series of a suction process to suck a fluid and a discharge process to discharge the sucked fluid, and a partial operation mode in which the actuator is driven to perform the series of processes partially.