Disclosed herein are methods and systems for detecting malicious files. An exemplary method comprises emulating execution of a file under analysis, forming a behavior log of the emulated execution of the file under analysis, forming one or more behavior patterns from commands and parameters selected from the behavior log, calculating a convolution of the one or more behavior patterns, selecting two or more models for detecting malicious files from a database, calculating a degree of maliciousness of the file being executed based using the convolution and the two or more models, forming a decision making template based on the degree of maliciousness and determining that the file is malicious when a degree of similarity between the decision making template and a predetermined decision making template exceeds a predetermined threshold value.