A method of providing a plurality of controller certificates for a plurality of controllers within a Building Management System (BMS) includes downloading project information defining the BMS and using the downloaded project information to solicit a Certificate Signing Request (CSR) from each of the plurality of controllers of the BMS. The received CSRs are uploaded to a remote server so that the remote server can generate a corresponding controller certificate for each of the plurality of controllers of the BMS. The generated controller certificates are then downloaded to the corresponding one of the plurality of controllers of the BMS.