An aircraft includes a fuselage and an engine housed in the fuselage. A ram-air engine inlet is formed on an exterior of the fuselage. The ram-air engine inlet is defined, at least in part, by a cowling door. The cowling door is moveable between a closed position and an open position. An intake duct fluidly couples the ram-air engine inlet to the engine. A filter is disposed across the intake duct. A bypass duct is formed in the ram-air engine inlet aft of the intake duct. The bypass duct is operable to be selectively opened and closed.