An apparatus is configured to apply a treatment agent to an agricultural byproduct. The apparatus includes a fragmenting chamber where the agricultural byproduct is fragmented into particles. An initial amount of a treatment agent is applied to the byproduct in the fragmenting chamber. Particles of a desired size flow through a screen from the fragmenting chamber to a recovery zone. A second amount of the treatment agent is applied to the particles in the recovery zone. A regulator regulates the amount of the treatment agent applied to the particles in the fragmenting chamber and the amount of treatment agent applied in the in the recovery zone. The regulation may be based on one or more feedback mechanisms.