A method is performed to compile input data including a plurality of pulse sequences, hardware parameters obtained from a computing device, and a mathematical model with time-dependent control parameters to decrease a computation time of the input data. The method also includes providing the input data to the computing device to allow the computing device to run a computation of the input data. The method further includes converting the pulse sequences into memory-aligned arrays to decrease the computation time of the input data. The method includes calculating optimized output data using an adaptive step size computation to decrease the computation time needed to compute the output data.