A gas supply system includes: a gas tank; an unbalanced pressure reducing valve that reduces a pressure of the gas supplied from the gas tank; a pressure sensor that detects an outlet-side pressure of the pressure reducing valve; a flow rate changing unit that changes an outlet-side flow rate of the pressure reducing valve; and a control unit. The control unit changes the outlet-side flow rate between first and second flow rates, obtains a first pressure, which is a detection value of the pressure sensor when the outlet-side flow rate is the first flow rate, and a second pressure, which is a detection value of the pressure sensor when the outlet-side flow rate is the second flow rate, and estimates an inlet-side pressure of the pressure reducing valve using the relationship among the first flow rate, the second flow rate, and the difference between the first and second pressures.