An improved method and system increases throughput in an independent cart system. The independent cart system includes multiple movers, controlled by a first controller, travelling along a track. At least one station is defined, where a device external to the track interacts with the movers on the track. A process controller controls operation of the external device and receives a communication from the first controller to begin execution of a task that the external device must complete prior to interaction with the mover. The first controller determines a time to destination for each mover to reach the station and transmits the signal or data packet to the process controller to initiate execution of the preparation task with sufficient time for the process controller to begin or complete the preparation task prior to the mover arriving at the station.