A system includes a bottom hole assembly and a core sampling tool. The bottom hole assembly includes a housing and a drill bit coupled to the housing. The core sampling tool includes a first compartment positioned within the housing, the first compartment including a motor; a second compartment positioned within the housing and radially spaced apart from the first compartment, the second compartment including a coring bit; and a flexible drilling shaft extending between and coupled to the motor and the coring bit.