A memory system includes a stacked memory device and a controller. The stacked memory device includes a base die and a plurality of memory dies stacked on the base die. Each of the plurality of memory dies has a plurality of channels, and the base die is configured to function as an interface for transmitting signals and data of the pluralities of channels. The controller controls the stacked memory device such that first and second data move control operations are sequentially performed to transmit moving data from a target channel of the pluralities of channels to a destination channel of the pluralities of channels. The first data move control operation is performed to store the moving data in the target channel into the base die, and the second data move control operation is performed to write the moving data stored in the base die into the destination channel.