A flow controller that changes the flow rate of air exhausted from an air cylinder in mid-stroke includes a first switching valve displaced from a first position to a second position under the effect of pilot air, and causing one port of the air cylinder to communicate with a first channel at the first position, exhausting air exhausted from the one port of the air cylinder while reducing the flow rate of the air using a first regulating valve at the second position. Since the pilot air is taken into the first switching valve from a second channel in a system different from the system of the first channel, a second regulating valve can be adjusted without being affected by the degree of opening of the first regulating valve.