A transport refrigeration unit (TRU) system is provided and includes a TRU and an energy storage device (ESD). The TRU includes components which are configured to control an environment and a TRU controller configured to control the components in accordance with component operating settings. The ESD includes an ESD controller receptive of identification data identifying the components, current condition data reflective of current conditions and control data reflective of a temperature profile. The ESD controller is configured to determine the component operating settings in accordance with the identification, current condition and control data and to issue the component operating settings to the TRU controller.