A quantum computing system and methods for performing fault-tolerant quantum computing. A fusion controller sequentially performs a series of fusion measurements on different fusion sites of a plurality of fusion sites to obtain a respective series of classical measurement results. The series of fusion measurements is performed on quantum modes of a logical qubit. For respective fusion measurements of the series of fusion measurements, a basis for performing the respective fusion measurement is selected based on classical measurement results of previous fusion measurements. The series of classical measurement results are in the memory medium.