Techniques are described herein for training a machine learning model and using the trained machine learning model to more accurately determine alignments between matching/corresponding nodes of predecessor and successor graphs representing predecessor and successor source code snippets. A method includes: obtaining a first abstract syntax tree that represents a predecessor source code snippet and a second abstract syntax tree that represents a successor source code snippet; determining a mapping across the first and second abstract syntax trees; obtaining a first control-flow graph that represents the predecessor source code snippet and a second control-flow graph that represents the successor source code snippet; aligning blocks in the first control-flow graph with blocks in the second control-flow graph; and applying the aligned blocks as inputs across a trained machine learning model to generate an alignment of nodes in the first abstract syntax tree with nodes in the second abstract syntax tree.