A method for displaying differences between a first executable dataflow graph and a second executable dataflow graph includes comparing a specification of the first executable dataflow graph and a specification of the second executable dataflow graph, including at least one of identifying a particular node or link of the first dataflow graph that does not correspond to any node or link of the second dataflow graph; and identifying a first node or link of the first dataflow graph that corresponds to a second node or link of the second dataflow graph, and identifying a difference between the first node or link and the second node or link. The method includes formulating and displaying a graphical representation of at least some of the nodes or links of the first dataflow graph or the second dataflow graph, the graphical representation including a graphical indicator of at least one of the identified particular node or link the identified difference between the first node or link and the second node or link.