A device for spatially normalizing a medical image includes: an adaptive template generation unit configured such that when a plurality of functional medical images are input to a deep learning architecture, the adaptive template generation unit generates, based on prestored learning data, an adaptive template for spatially normalizing the plurality of functional medical images; a learning unit configured to learn by repeating a process of generating an image from an input functional medical image of a user based on the adaptive template through a generative adversarial network (GAN) and determine authenticity of the generated image; and a spatial normalization unit configured to provide the functional medical image of the user which is spatially normalized based on results of the learning.