An emitter ID ambiguity reduction system includes a Mission Data File Ambiguity Resolution matrix that contains both a) the INTEL-based emitter parameters data necessary to break emitter-by-emitter ambiguities, and b) the action(s) the Electronic Warfare (EW) system is to take to collect that data. Control software is triggered via either external command or per Mission Data File information (such as that contained in the Ambiguity Resolution Matrix). The emitter ID ambiguity reduction system includes Data collection hardware and firmware and Data Analysis OFP software algorithm(s).