A method of medical imaging including receiving k-space data that is divided into multiple k-space data groups, selecting one of the multiple k-space data groups as a reference k-space data group, and calculating spatial transform data for each of the multiple k-space data groups by inputting the multiple k-space data groups and the reference k-space data group into a transformation estimation module. The spatial transformation estimation module is configured for outputting spatial transform data descriptive of a spatial transform between a reference k-space data group and multiple k-space data groups in response to receiving the reference k-space data group and the multiple k-space data groups as input. The method further comprises reconstructing a corrected magnetic resonance image according to the magnetic resonance imaging protocol using the multiple k-space data groups and the spatial transform data for each of the multiple k-space data groups.