The present invention discloses a centrifugal fuel purifying apparatus, including, a center shaft, a centrifugal cylinder, a shaft seat, a rotating skeleton, a disc type guide plate, a fuel gathering impeller, a rotating wheel, a vacuum pump, a fuel outlet pipe, a fuel inlet, pipe, a fuel unloading box, a pollutant receiving box, a tank body and a PLC controller, wherein the alarm fuel tank is arranged at the top in a tank body of the fuel tank, a fuel level meter is disposed within the alarm fuel tank, a fuel inlet is provided on the upper part of one side of the alarm fuel tank above the fuel level meter, a fuel outlet is provided on the lower part of one side of the alarm fuel tank below the fuel level meter, and the fuel inlet is communicated with the centrifugal cylinder through the fuel inlet pipe.