In one example, a computer implemented method may include determining an application to be monitored in an endpoint, generating a marker with a unique identifier corresponding to the application running in the endpoint, bundling configuration data within the marker. The configuration data may include configuration settings of a monitoring agent installed on the endpoint to monitor the application. Further, the method may include appending the marker bundled with the configuration data to a configuration file of the monitoring agent and enabling the monitoring agent to monitor the application based on the configuration data in the configuration file.