Disclosed is a computer-implemented method for generating an anonymized medical image of an anatomical body part of a patient, a corresponding computer program, a program storage medium storing such a program and a computer for executing the program, as well as a medical system comprising an electronic data storage device and the aforementioned computer. The disclosed method encompasses establishing a mapping from a patient image onto an atlas, changing that mapping, and applying the inverse of the changed mapping to the atlas in order to transform image content from the atlas to the patient image in order to achieve a deformed and thereby anonymised appearance of the patient image.