The present disclosure provides a method of manufacturing a semiconductor structure. The method includes: receiving a substrate; forming a bit line structure on a top surface of the substrate; forming a spacer structure on the bit line structure, the spacer structure including a sacrificial layer sandwiched by a first dielectric layer and a second dielectric layer; removing the sacrificial layer to form a gap between the first dielectric layer and the second dielectric layer; reducing a width of the gap; and forming a seal layer to seal the gap.