A system for retrieving a source element from a well may include a logging tool made of a first material, a milling tool, and a control device. The logging tool may include a cylindrical housing having a central chamber housing the source element and extending through a portion of the cylindrical housing along a central axis thereof. The logging tool may include a first communication device mounted on the cylindrical housing. The milling tool may include a tubing mounting structure that secures the milling tool to a tubing of the well. The milling tool may include a drill bit head made of a second material, the drill bit head may be configured for milling through the first material. The control device may include a second communication device configured to communicate with the first communication device.