The present disclosure provides a method, an apparatus and a system for processing unmanned vehicle data, and a storage medium, where the method includes: receiving data acquisition indication information sent by a cloud server; obtaining, according to the data acquisition indication information, target data from a data set; and storing the target data, and/or sending the target data to the cloud server, which can thereby achieve acquisition and storage of data meets a preset condition, reduce amount of data storage of the unmanned vehicle and amount of data sent to the cloud server, save network resources, and improve data transmission efficiency.