A linear motor conveyor system including: a plurality of track sections including a track and an interior area; a track cover covering the track of the plurality of track sections; a top plate covering at least a portion of the interior area of the plurality of track sections; at least one top cover covering at least a portion of the top plate and any uncovered portions of the interior area; and a plurality of gaskets providing a seal between the track cover and track, top cover and top plate such that the interior area of the plurality of track sections are sealed. The track cover may be a strong, flexible material configured to wrap along or around the track to cover any joints between track sections and provide a sealed, easy to clean cover.