According to one embodiment, a magnetic disk device includes a magnetic disk, a magnetic head, a control unit, and a setting unit. The magnetic head includes a write element which writes data to the magnetic disk and heater elements which adjust a levitation amount relative to the magnetic disk. The setting unit sets a heater value to be set on the basis of a measurement result of measuring the recording quality of the data written to the magnetic disk. The control unit controls electric power to be supplied to the heater elements on the basis of the heater value to be set to the setting unit.