An integrated multimode thermal energy transfer system, method and apparatus for full-scale clean fuel electric-powered multirotor aircraft with automatic on-board-capability to provide sensor-based temperature awareness and adjustment to critical components and zones of the aircraft. Automatic computer monitoring, including by a programmed triple-redundant digital autopilot computer, controls each motor-controller and motor to produce pitch, bank, yaw and elevation, while simultaneously measuring, calculating, and adjusting temperature and heat transfer of aircraft components and zones, to protect critical components from exceeding operating parameters and to provide a safe, comfortable environment for occupants during flight. By using the results of the measurements to inform computer monitoring, the methods and systems can use byproducts including thermal energy disparities and differentials related to both fuel supply systems and power generating systems to both add and remove heat from different aircraft zones to improve aircraft function, comfort, and efficiency.