A fuel cell system includes: a fuel cell that includes an installation port and a discharge port for a reactant gas; a first injection device that intermittently injects the reactant gas; second and third injection devices that continuously inject the reactant gas; an ejector that includes an ejection port for the reactant gas from the first or second injection device and the discharge port; a first flow passage that connects the installation port and the ejection port; a second flow passage through which the reactant gas from the third injection device is led to the first flow passage without the ejector; and a control device that performs a warm-up operation by executing the injection of the third injection device, executes the injection of the second injection device, and executes the injection of the first injection device after completion of the warm-up operation.