Systems and methods are provided relating to a complex adaptive command guided swarm system including an operator section comprising a first command and control section and a plurality of networked swarm of semi-autonomously agent controlled system of systems platforms (SAASoSPs). The first command and control section includes a user interface, computer system, network interface, and plurality of command and control systems executed or running on the computer system. The networked SAASoSPs each include a second command and control section, wherein the second command and control section utilizes artificial intelligence (AI) configured with a combination of both symbolic and probabilistic machine learning for various functions including pattern recognition and new pattern identification. The AI is also configured to combine advice-based learning with active learning, wherein the AI solicits advice from a domain expert user via the first command and control section as necessary during both training and operational stages of the system.