A system for controlling stop of a vehicle includes a steering angle comparison device that detects a current steering angle of the vehicle and compares the detected current steering angle with a preset limit steering angle when a malfunction of a steering system in the vehicle is detected during autonomous driving, a partial braking induction determination device that determines a position of a tire of the vehicle to be subjected to partial braking for steering control of the vehicle according to a result of the comparing between the current steering angle and the limit steering angle, and a partial braking control device that determines an amount of braking to be applied to each determined tire of the vehicle and applies a braking pressure corresponding to the amount of braking to each tire of the vehicle to perform the steering control by the partial braking.