A controller of an isolated switching converter having a primary and secondary switch, the controller includes a valley detection circuit for providing a valley pulse signal in response to valleys of a resonant voltage, a pulse frequency modulation circuit for providing a pulse frequency modulation signal based on a feedback signal indicative of an output voltage, a primary on enable circuit for providing a primary on enable signal based on the pulse frequency modulation signal and valley pulse signal, a secondary logic circuit for generating a secondary control signal to control the secondary switch based on a primary off detection signal, a zero cross detection signal and the primary on enable signal, and a primary logic circuit for generating a primary control signal to control the primary switch based on a synchronous signal electrically isolated from the primary on enable signal.