Provided is a system for manufacturing a secondary battery including: a positive electrode cell manufacturing line having a positive electrode single cell, on which a positive electrode tab is processed on one end of a positive electrode and a first separator is combined on one surface of the positive electrode, is continuously manufactured; a negative electrode cell manufacturing line having a negative electrode single cell, on which a negative electrode tab is processed on one end of a negative electrode and a second separator is combined on one surface of the negative electrode, is continuously manufactured; and a stacking part alternately receiving positive electrode single cells and negative electrode single cells respectively from the positive electrode cell manufacturing line and the negative electrode cell manufacturing line to stack the positive electrode single cells and the negative electrode single cells up to a predetermined layer, thereby forming a stack cell.