Systems, methods and apparatus for storing or parsing a visual media file according a file format include performing a conversion between a visual media data and a visual media file that stores a bitstream of the visual media data according to a format rule. The visual media file stores one or more tracks comprising one or more video layers. The format rule specifies that whether a first set of syntax elements indicative of layer dependency information is stored in the visual media file is dependent on whether a second syntax element indicating that all layers in the visual media file are independent has a value 1.