According to an embodiment, a magnetic disk device includes a magnetic disk, a spindle motor that rotates the magnetic disk, a motor driver, and a controller. The motor driver supplies a motor current to the spindle motor and measures a counter electromotive voltage of the spindle motor every time the spindle motor makes one rotation. After the rotation of the magnetic disk starts, the controller adjusts a motor position where the counter electromotive voltage is measured to a set first position.