An exemplary embodiment of the present disclosure is an electric vehicle charger control system linked with an EMS including a communication unit which receives allowable power information which is information about available power to charge an electric vehicle from an energy management system (EMS); a management unit which generates charger setting information which is information about charging setting in consideration of at least one of a priority for every charger, a maximum/minimum charging power amount for every charger, a current charging power amount for every charger, and reservation state information of the user, for the plurality of electric vehicle chargers, using the allowable power information; and a control unit which controls the plurality of electric vehicle chargers according to the charger setting information for every charger.