An object of the present invention is to provide a brake control device and a brake system capable of braking with a shortened braking response when shifting from non-braking to braking. A brake control device 10 includes a command value calculation unit 4 that calculates an operation command value required to make a pressing force by which a brake pad 11a is pressed against a brake disc 11b reach a target thrust value. The command value calculation unit 4 includes: a clearance command calculation unit 43 that calculates a command value required for contact between the brake pad 11a and the brake disc 11b; and a thrust command calculation unit 40 that calculates a command value required for reaching the target thrust from a state where the brake pad 11a and the brake disc 11b are in contact with each other. When calculating the operation command value from a state where the brake pad 11a and the brake disc 11b are separated, the command value calculation unit 4 calculates the operation command value by integrating the command value calculated from the clearance command calculation unit 43 and the command value calculated from the thrust command calculation unit 40.