According to one embodiment, a magnetic disk device includes a disk, a head, a command queue, a command residence time calculation unit calculating a residence time of each of commands in the command queue, a command information calculation unit calculating the number of the commands and a ratio, a limit time determination unit obtaining a latency limit time corresponding to the number of commands and the ratio, from a latency limit time determination table, and a command selection processing unit selecting a command to be executed, by considering the latency limit time.