A fuel cell vehicle includes a bypass valve positioned downstream of a compressor and upstream of a fuel cell stack to selectively direct airflow from the compressor to an exhaust bypassing the fuel cell in an attempt to clear a partially or fully obstructed exhaust pipe. The bypass valve may be opened by a controller when an exhaust throttle valve is at or near a wide-open throttle position. The controller may also increase compressor flow and adjust airflow to the fuel cell stack until compressor pressure, speed, or temperature exceed corresponding limits.