Embodiments of the disclosure provide methods and systems for joint abnormality detection and physiological condition estimation from a medical image. The exemplary method may include receiving, by at least one processor, the medical image acquired by an image acquisition device. The medical image includes an anatomical structure. The method may further include applying, by the at least one processor, a joint learning model to determine an abnormality condition and a physiological parameter of the anatomical structure jointly based on the medical image. The joint learning model satisfies a predetermined constraint relationship between the abnormality condition and the physiological parameter.