The present invention discloses a method, device and medium for structuring a capsule endoscopy report text. The method includes: annotating the report text using an annotation model; storing each named entity classification label in the report text in a hierarchical tree structure according to the annotation information to form a tree structure diagram; parsing the tree structure diagram, extracting abnormal structure data and time parameters, and storing the abnormal structure data and time parameters in a panel data structured manner to form an abnormal structure panel table and a time parameter panel table. The present invention can automatically annotate the capsule endoscopy report through the annotation model, and output parameters of different amount of information in different structures, and quantitative and accurate quality control of the capsule endoscopy process and examination results, which provide sufficient convenience for the electronic medical information of the capsule endoscopy.