A two stage fuel delivery system for an aircraft includes a first stage pump including an inlet connected to a source of fuel and an outlet connected to a combustor assembly, and a second stage pump including an inlet portion connected to the source of fuel and an outlet portion connected to the combustor assembly. A bypass valve is connected between the source of fuel, the inlet, and the inlet portion. The bypass valve selectively disconnects the second stage pump from the source of fuel. A metering valve is connected to the inlet and the inlet portion. The metering valve includes a metering valve inlet and a metering valve outlet. A pressure regulating valve is connected to the metering valve. A stage monitoring system is configured to detect a change in operation of the second stage and control the bypass valve.