A device, and a corresponding method, for controlling a wiper of a vehicle may include: a storage that stores a reference table, wherein each wiper operation mode corresponding to each rainfall and each sensitivity level is recorded in the reference table; a rain sensor that measures the rainfall; a wiper switch that receives a wiper operation mode and a sensitivity level input from a driver; and a controller that detects a wiper manipulation pattern of the driver based on the measured rainfall and that changes the reference table to a driver-customized-table based on the wiper manipulation pattern of the driver.