Invention Grant
- Patent Title: Quality value compression framework in aligned sequencing data based on novel contexts
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Application No.: US17797146Application Date: 2021-01-27
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Publication No.: US12125562B2Publication Date: 2024-10-22
- Inventor: Shubham Chandak , Yee Him Cheung
- Applicant: KONINKLIJKE PHILIPS N.V.
- Applicant Address: NL Eindhoven
- Assignee: Koninklijke Philips N.V.
- Current Assignee: Koninklijke Philips N.V.
- Current Assignee Address: NL Eindhoven
- International Application: PCT/EP2021/051782 2021.01.27
- International Announcement: WO2021/156110A 2021.08.12
- Date entered country: 2022-08-03
- Main IPC: G06F16/00
- IPC: G06F16/00 ; G06F16/215 ; G16B30/10 ; G16B50/50

Abstract:
A method for compressing information includes accessing a read of genomic sequencing data, aligning the read to a reference, generating alignment data based on alignment of the read, obtaining a set of contexts based on the alignment data, and compressing quality values corresponding to the alignment data based on the set of contexts. The alignment data may provide an indication of errors in the genomic sequencing data, and each of the quality values may provide an indication of a probability of error at one or more bases in the genomic sequencing data.
Public/Granted literature
- US20230053844A1 Improved Quality Value Compression Framework in Aligned Sequencing Data Based on Novel Contexts Public/Granted day:2023-02-23
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