A CPU acquires projection images captured at each irradiation position in a state in which a marker is disposed and set irradiation positions set as the irradiation positions of the projection images, generates a tomographic image from the projection images using the set irradiation positions, derives the coordinates of a three-dimensional position where the marker is disposed from the tomographic image, derives a first two-dimensional position of the marker projected onto the projection plane from the set irradiation positions and the coordinates of the three-dimensional position of the marker, and estimates the irradiation positions on the basis of the first two-dimensional position and a second two-dimensional position of the marker in the projection plane which is specified from a marker image indicating the marker included in each of the projection images.