A system and method for unsupervised superpixel-driven instance segmentation of a remote sensing image are provided. The remote sensing image is divided into one or more image patches. The one or more image patches are processed to generate one or more superpixel aggregation patches based on a graph-based aggregation model, respectively. The graph-based aggregation model is configured to learn at least one of a spatial affinity or a feature affinity of a plurality of superpixels from each image patch and aggregate the plurality of superpixels based on the at least one of the spatial affinity or the feature affinity of the plurality of superpixels. The one or more superpixel aggregation patches are combined into an instance segmentation image.