The techniques described herein provide improved techniques for segmenting corneal epithelium layer. A method includes receiving an optical coherence tomography (OCT) image of an eye; generating, based on the OCT image, a binarized image of the eye; generating, based on the binarized image of the eye and the OCT image, a binary mask of a cornea of the eye; segmenting, based on the binary mask of the cornea of the eye, an anterior cornea of the eye on the OCT image; generating, based on the OCT image and the segmented anterior cornea, a binary mask for an epithelium layer of the eye; segmenting, based on the binary mask for the epithelium layer of the eye, a Bowman's layer in the cornea of the eye on the OCT image; and causing the segmented anterior cornea and the segmented Bowman's layer data to be used for generation of an epithelium map.